Musings on a meeting of Australasian plant pathologists

In November 2019 I was excited to attend the Australasian Plant Pathology Society’s biennial conference in Melbourne. A big drawcard for me were the fantastic plenaries and keynotes spread across all three days of the conference. To start off Brett Summerell, the APPS President, showed us how we can effectively communicate scientific findings in a ‘post-truth, post-trust, post-expert world’ where facts are outweighed by opinion. Sophien Kamoun gave the EMBO Keynote lecture where he stressed the importance of sequencing and releasing the genomes of emerging plant pathogens, the new modes we have for releasing information and the impact that worldwide collaboration and free flow of information can have on a disease outbreak. There were also amazing plenaries by Carolee Bull on translational taxonomy, George Sundin on the fire blight pathogen, Thierry Candresse on viral detection with high throughput sequencing, Hailing Jin on small RNAs in plant-pathogen interactions and Neena Mitter on the development of an RNA spray for crop protection. I could go on and on!

There were so many interesting sounding talks across the five parallel sessions – I really wanted to have a Hogwarts time-turner so I could manage to be in multiple places at once! In the end I decided to concentrate my attention on the Biocontrol, Plant-Microbe Interactions and Pathogenomics sessions. These topics complement my PhD work where I’m using a genome-wide methodology to identify plant colonisation genes of a biocontrol bacteria. There were so many fascinating talks – some of the highlights that pushed me to the edge of my knowledge were on fungal genome sequencing, small RNAs and fungal effectors.

The three poster sessions were really busy! I enjoyed seeing a broad cross-section of plant science and meeting so many great scientists. The poster sessions gave me a peek into research areas where I didn’t get to see presentations and gave me lots of fantastic ideas for poster designs and the ways people use posters to communicate their science. It was wonderful to see both early career researchers and more senior members of the community presenting posters. I haven’t seen this broad range of career stages presenting posters at other conferences. This was a really great way to approach more senior scientists.

As well as attending the main conference I really enjoyed participating in two of the satellite sessions. The 4th Australian Pathogen Bioinformatic Symposium (APBS) was held at Agribio, La Trobe University the day before the main conference. I presented my work on transposon insertion sequencing in a plant-associated bacteria and had some great interactions with the researchers in the audience. It was a low-key, collegial start to the conference which meant I already knew a few people when I got to the much bigger main conference. Afterwards I enjoyed the Molecular Plant-Microbe Interactions joint session with the Australian Society of Plant Scientists, again at AgriBio. There were some really engaging presentations on topics as diverse as engineering the root microbiome with plant root exudates, detecting compounds on the surface of pathogenic fungi, and the transport of iron in Rhizobia-legume symbiosis.

To round out a wonderful conference experience there were two fabulous social events. The welcome reception was held the evening before the first full day of the conference and was a superb way to meet new people (plus the food was amazing!). The gala dinner was a more formal affair held in the stunning Mural Hall. I met a wonderful range of researchers over dinner and was introduced to some people I wouldn’t have met otherwise.

I’m very grateful for the support of APPS which allowed me to attend the conference, present my PhD research and meet so many fantastic scientists. Thank-you as well to the organising committee for supporting gender equality and making sure that there was gender balance in the presenters at every level.

Finding plant-microbe conferences

For my PhD I’m looking at genes involved in the colonisation of biocontrol (beneficial) bacteria on plant surfaces. Along with the challenge of filtering out predatory conferences, it was really frustrating trying to find meetings that would be relevant for my research area. So I thought I’d share my search strategy and the events I found so you can save time and get a head start.

There’s so many different synonyms for conference –> meeting, symposium, congress, conference, forum, seminar, event, and so on… I wanted to broaden my search without having to do every combination of words to find relevant events, so I devised a shortcut. Keywords that identified for my area of study are: plant, soil, rhizosphere, plant-microbe, microbiology, beneficial bacteria and biocontrol. I googled each keyword along with the year I was looking for. Still a lot of searches, but waaaay less than if I had to include every synonym for conference.

This is the list of conferences I came up with (in chronological order) and a summary of the information I noted down. Based on past conference dates I’ve guessed some conference timings (I’ve noted them as predicted). Please let me know if you have more information on any conferences listed here or other conferences that fit in my list. As I find more conferences or more details I’ll update the list*.

Enjoy!

*last updated 15 February 2020

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2020

Plant and Animal Genome XXVIII
January 11-15, 2020 – San Diego, California, USA

16th Congress of the Mediterranean Phytopathological Union
March 23-27, 2020 – Limassol, Cyprus

Microbiology Society Annual Conference
March 31-April 3, 2020 – Edinburgh, Scotland, UK

Plant Biology Europe 2020
(bi-annual event jointly organised by EPSO and FESPB)
June 29-July 2 – Turin, Italy

14th International Conference on Plant Pathogenic Bacteria (ICPPB)
June 7-12, 2020 – Assisi, Umbria, Italy

IOBC-WPRS Working Groups “Integrated Plant Protection in Fruit Crops”, Sub Group “Pome Fruit Diseases”
June 15-18, 2020 – Plovdiv, Bulgaria

ASM Microbe 2020
June 18-22, 2020 – Chicago, Illinois, USA

25th International Conference on Virus and other Graft Transmissible Diseases of Fruit Crops
June 22-26, 2020 – Amersfoort, The Netherlands

8th Conference on Beneficial Microbes
July 12-16, 2020 – Madison, Wisconsin, USA

ASPB Plant Biology 2020
July 25-29, 2020 – Washington DC, USA

IOBC-WPRS Working Groups “Integrated Control in Protected Crops, Temperate and Mediterranean Climate”
August 31–September 3, 2020 – Brest, France

Plant Health, Agriculture & Bioscience conference (PHAB 2020)
September 9-11, 2020 – The Hague, Netherlands

Asian Conference on Plant Pathology 2020 (ACPP 2020)
September 15-18, 2020 – Tsukuba Science City, Ibaraki, Japan

Combio 2020
September 29 – October 2, 2020 – Melbourne, Australia
Incorporates annual meetings of five Australian and New Zealand biological societies

International Plant Health Conference
October 5-8, 2020 – Helsinki, Finland
‘Protecting Plant Health in a Changing World’ – one of the key events of the International Year of Plant Health

Harnessing the Plant Microbiome
October 23-25, 2020 – University of California, Davis, USA
Announced on Nature Conferences

13th Arab Conference of Plant Protection
November 1-6, 2020 – Hammamat, Tunisia

11th Australasian Soilborne Disease Symposium
November 24-27, 2020 – Cairns, Queensland, Australia

Predicted: 10th meeting of the IOBC-WPRS Working Group “Biological and Integrated Control of Plant Pathogens”

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2021

Plant and Animal Genome XXIX
January 9-13, 2021 – San Diego, California, USA

ASM Microbe 2021
3-7 June, 2021 – Anaheim, California

XIX Congress of International Society of Molecular Plant-Microbe Interactions
25-29 June 2021 – Jeju, Korea

13th International Congress on Plant Molecular Biology (IPMB2021)
October 24-28, 2021 – Cairns, Queensland, Australia
Triennial conference (last one held in 2018)

Predicted: AusME – Australian Microbial Ecology conference
(held every 2 years – last one 2019)

ISRR 11th International Symposium
Predicted: Missouri, USA (provisional)

Biennial conference of Australasian Plant Pathology Society
Hobart, Tasmania
(held every 2 years – last one 2019)

Predicted: 12th International Plant Growth-Promoting Rhizobacteria Workshop
(Held every 3 years – last one 2018)

Predicted: Micrope2021
(Held every 2 years – last one 2019)

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2022

Predicted: 5th International Symposium on Biological Control of Bacterial Plant Diseases
(Held every 3 years – last one 2019)

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2023

ICPP2023: 12th International Plant Protection Congress
“ONE HEALTH for all plants, crops and trees”
(Held every 5 years)
August 20-25, 2023 – Lyon, France

XX IBC 2023
July 1-7, 2023 – Rio de Janeiro, Brazil

Predicted: Rhizosphere6
(Held every 4 years? last one 2019, one before 2015)

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Past conferences: 2018

2nd Plant Microbiome Symposium
February 19-21, 2018 – Amsterdam, The Netherlands

Microbiology Society Annual Conference 2018
April 10-13 – Birmingham, UK

XV Meeting of the IOBC-WPRS Working Group “Biological and integrated control of plant pathogens” – Biocontrol products: from lab testing to product development
International Organisation for Biological and Integrated Control (IOBC)
April 23-26, 2018 Lleida, Catalonia, Spain

1st International Congress of Biological Control
May 14-16, 2018 – Beijing, China

ASM Microbe 2018
June 7-11, 2018 – Atlanta, Georgia, USA

11th International Plant Growth-Promoting Rhizobacteria Workshop
(Held every 3 years)
June 17-21, 2018 – Victoria, British Columbia, Canada

Plant Biology Europe 2018
June 18-21, 2018 – Copenhagen, Denmark

Plant Biotic Stresses & Resistance Mechanisms III
July 2-3, 2018 – Vienna, Austria

SEB Masters of Biology
July 3-6, 2018

7th Conference on Beneficial Microbes
July 8-11, 2018 – Madison Wisconsin

ISRR-10 Exposing the Hidden Half: Root Research at the Forefront of Science
July 8-12, 2018 – Israel

ASPB Plant Biology 2018
July 14-18 – Montreal, Canada

11th International Congress of Plant Pathology (ICPP): Plant Health in a Global Economy
(Held every 5 years)
July 29-August 3, 2018 – Boston, USA

ICOBM-2018 International Conference on Beneficial Microbes: Microbes for the Benefit of Mankind
August 1-3, 2018 – Kuching, Malaysia

10th Australasian Soilborne Diseases Symposium
September 4-7, 2018 – Adelaide, Australia

ComBio 2018
September 23-26, 2018 – Sydney, Australia

1st International Conference on Biological Control: Approaches and Applications
September 27-29, 2018 – Bengaluru, India

Microbes Underpinning Agriculture: Focused Meeting 2018
October 1-2, 2018 – Cork, Ireland

AusBiotech 2018
October 31-November 2, 2018 – Brisbane, Australia

International Symposium of the Plant Microbiome: Exploration of Plant-Microbe Interactions for Improving Agricultural Productivity
November 18-22, 2018 – Hurghada Egypt

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Past conferences: 2019

Plant and Animal Genome XXVII
January 12-16, 2019 – San Diego, California, USA

8th International Conference on Polar and Alpine Microbiology
February 4-8, 2019 – Hamilton, New Zealand

AusME – Australian Microbial Ecology conference
February 11-13, 2019 – University of Western Australia

19th International Meeting on Visualising Biological Data
13-15 March, 2019 – EMBL Heidelberg, Germany

Microbiology Society Annual Conference 2019
April 8-11, 2019 – Belfast Waterfront, UK

ASM Microbe 2019
June 20-24, 2019 – San Francisco, California, USA

Biopesticide Summit 2019
July 2-3, 2019 – Swansea University, Swansea, UK

Rhizosphere5
July 7-11, 2019 – Saskatoon, Saskatchewan, Canada

8th Congress of European Microbiologists (FEMS)
July 7-11, 2019 – Glasgow, Scotland

4th International Symposium on Biological Control of Bacterial Plant Diseases
July 9-11, 2019 – Viterbo, Italy

New Approaches and Concepts in Microbiology (Symposium)
9-12 July, 2019 – EMBL Heidelberg, Germany

Canadian Soil Science annual meeting
July 9-13, 2019 – Saskatoon, Saskatchewan, Canada

Applied and Environmental Microbiology
Gordon Research Conference & Seminar
July 13-19, 2019 – Mount Holyoke College, South Hadley, MA, USA

XVIII International Society for Molecular Plant-Microbe Interactions (ISMPMI)
July 14-18, 2019 – Glasgow, Scotland

17th International Conference on Pseudomonas
July 22-26, 2019 – Malaysia

2019 International Congress on Invertebrate Pathology and Microbial Control
(52nd Annual Meeting of the Society for Invertebrate Pathology)
(17th Meeting of the IOBC-WPRS Working Group “Microbial and Nematode Control of Invertebrate Pests”)
July 28-August 1, 2019 – Valencia, Spain

ASPB Plant Biology 2019
August 3-7, 2019 – San Jose, California, USA

Plant Health 2019
American Phytopathological Society annual meeting
August 3-7, 2019 Cleveland, Ohio, USA

6th International Conference on Bacterial Blight and Bacterial Leaf Streak of Rice
August 18-22, 2019 – Cantho City, Vietnam

Arms Race: The Evolution of Plant Pathogens and Their Hosts
September 2-3, 2019 – Bristol, UK

3rd Wild Plant Pathosystems Conference
September 16-19, 2019 – close to Frankfurt, Germany

Biocontrol Asia
September 25-27, 2019 – Chengdu, Sichuan Province, China

9th meeting of the IOBC-WPRS Working Group “Integrated Protection in Oak Forests”
October 7-11, 2019 – Oeiras, Portugal

2nd Biopesticides North America Conference
October 9-10, 2019 – Orlando, Florida, USA

Meeting of the IOBC-WPRS Working Group “Integrated Protection of Field Vegetables”
October 13-16, 2019 – Stratford-upon-Avon, UK

ABIM 2019, Annual Biocontrol Industry Meeting (ABIM)
October 21-23, 2019 – Basel, Switzerland

Meeting of the IOBC-WPRS Working Group “Integrated Protection in Viticulture”
November 5-8, 2019 – Vila Real, Portugal

XIX International Plant Protection Congress (IPPC2019)
November 10-14, 2019 – Hyderabad, India

Plant BioProTech 2019: 2nd International Symposium on Plant Bioprotection Sciences and Technologies
November 19-22, 2019 – Marrakesh, Morocco

Advances in Biocontrol and IPM 2019: Addressing the Innovation Crisis
November 20-21, 2019 – Lincolnshire, UK

22nd Biennial Australasian Plant Pathology Society conference
November 25-28, 2019 – Melbourne, Australia

4th Australian Pathogen Bioinformatic Symposium (APBS)
Additional ‘workshop’ for Australasian Plant Pathology Society conference
November 25, 2019 – Melbourne Australia

Australian Society of Plant Scientists (ASPS) conference
November 24-29, 2019 – Melbourne, Australia

Ecological Society of Australia conference
November 24-29, 2019 – Hobart, Australia

New Zealand Microbiological Society (NZMS) annual conference
November 25-28, 2019 – Palmerston North, New Zealand

VIII Congress on Plant Protection: “Integrated Plant Protection for Sustainable Crop Production and Forestry
November 25-29, 2019 – Zlatibor, Serbia

Micrope2019 International Symposium: Microbe-Assisted Crop Production – Opportunities, Challenges and Needs
December 2-5, 2019 – Vienna, Austria

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Tiny life sticking to growing green things

Communicating science to non-scientists is important, but often the jargon scientists use makes their work impenetrable, even to other scientists. So how can scientific writing become less obscure and more approachable? Randall Monroe, the creator of xkcd webcomics, gave it a go with his annotation of a Saturn V rocket blueprint. The annotation used only the 1000 most commonly used words, so instead of Saturn V the name of the rocket became Up Goer Five.

So can scientific communication in my field (microbiology and genetics) be effective using only the 1000 most commonly used words? In the interests of simplifying my writing, I wrote a summary of my PhD project using only the 1000 most commonly used words (using this text editor):

This study wants to find the ‘small pieces’ which are important for tiny life (the helping ones) to stick to growing green things. Pseudomonas tiny life are some of the best helping tiny life and one of the most well-known ones, Pseudomonas protegens Pf-5, can control problems in growing green things used for food. But in the field, helping tiny life show does not stick to growing green things very often or very well. This study will look at the whole set of ‘small pieces’ important for P. protegens Pf-5 to stick to growing green things. Making tiny life stick better to growing green things will help lower problems with growing green things and better the return from growing green things used for food, which are important both here and around the world.

This is hilarious and obviously oversimplified (to the point of not making sense in a lot of places). For comparison, this is the ‘normal’ version of my project summary:

The project aims to identify the essential genes for colonisation of plant surfaces by biocontrol bacteria. Pseudomonas bacteria are some of the most successful biocontrol bacteria and one of the most well-known strains, Pseudomonas protegens Pf-5, has the ability to control diseases that affect cotton, wheat, pea, maize, tomatoes and potatoes. Despite this, field trials of biocontrol bacteria show a lack of reliability and persistence on plant surfaces. This project will conduct a genome-wide study of genes essential for P. protegens Pf-5 colonisation of plant surfaces. Enabling reliable colonisation of crop roots by biocontrol bacteria will contribute to lowering plant disease and increasing crop yields, which are important both in Australia and internationally.

From this exercise I learned that some level of complicated language is important to communicate a precise meaning (important in science), but not every complicated word is necessary. Sometimes the language I choose can be off-putting to the reader, make my work harder to understand and appear pretentious even when I don’t mean it to.

So overall, science writing in my field using the 1000 most used words is not practical and makes it harder, not easier to understand (even nonsensical in places). But it’s an interesting exercise to see just how much jargon you’ve used or if a simpler word will do in place of a complicated one. And wouldn’t we all like simpler rather than complex!

Drought vs Deluge – How Will Grasslands Cope with Climate Change?

Climate change due to human activities is predicted to change many aspects of the environment, from atmospheric carbon dioxide to temperature and rainfall1. Modellers are confident in the projected temperature increases, but the predictions about rainfall are much less certain. Changes in rainfall patterns will impact on many aspects of ecosystems, including how nutrients move.

Associate Professor Sally Power studies how these nutrient cycles are being affected by human-induced changes in the environment. She took up a position two years ago at the Hawkesbury Institute of the Environment, University of Western Sydney after completing her studies and working at the Imperial College in London. She previously completed a post-doctoral position at La Trobe University, Melbourne and loved Australia, so now she’s here permanently. Associate Professor Power is passionate about the understanding the interactive impact of multiple climate drivers on ecosystems.

At a recent seminar at Macquarie University Associate Professor Power spoke about three projects she is involved with at the moment:

  1. Drought and diversity in the UK (DIRECT)
  2. Rainfall extremes (DRI-grass)
  3. Elevated CO2 impacts on forest nutrient cycling (EucFACE)

The DIRECT project (Diversity, Rainfall and Elemental Cycling in a Terrestrial Ecosystem) aims to answer questions about how grassland ecosystems will respond to predicted rainfall changes and whether biodiversity will buffer these effects of a rainfall pattern change2. To test these ideas the research team constructed an array of grassland plots with a range of plants functional groups – perennials, caespitose grasses and annual plants (Figure 1)3.

Figure 1. Plant traits selected for the DIRECT experiment Image: Grantham Institute, Imperial College London (4).

Figure 1. Plant traits selection for the DIRECT experiment
Image: Grantham Institute, Imperial College London (4).

Rainfall predicted for the year 2100 (down 30% in summer, up 15% in winter) was applied to these plots to see how different vegetation communities might respond to rainfall changes2. Key ecosystem processes (such as respiration rate and nutrient cycling) were faster when there were a range of perennial plants present. Process rates in vegetation plots dominated by annual plants or caespitose grasses were not strongly affected by changes in rainfall2. This research showed that plant functional groups are important for maintaining grassland ecosystem function and they need to be considered in future management plans2.

In addition, the researchers used different plots in the same area and changed the rainfall pattern to see if drought and deluge impact differently on the grassland ecosystem. The rainfall treatments used were5:

  • Current levels;
  • Prolonged drought – 30% drop in rainfall; and
  • Reduced frequency – same amount of rain, concentrated into heavier falls less frequently.

The key findings were that changing the frequency of rainfall affected the number of species, especially the perennial species5. Surprisingly the number of species was not affected by the change in the total amount of rain (prolonged drought). The reduced rainfall frequency also lead to an increase in respiration and the grassland ecosystem switched from being a net carbon sink to net carbon source (from overall absorbing carbon to overall emitting carbon; Figure 2)5. The results of this experiment suggest that grassland ecosystems are relatively resistant to predicted rainfall changes5.

Figure 2. Change from carbon sink to carbon source for each of the  rainfall treatments (A = ambient; PD = prolonged drought; RF = reduced frequency). (Adapted from image presented by Associate Professor Sally Power)

Figure 2. Change from carbon sink to carbon source for each rainfall treatment (A = ambient; PD = prolonged drought; RF = reduced frequency; adapted from image presented by Associate Professor Power)

Associate Professor Power is also in the preliminary stages of some large scale experiments in western Sydney. The first of these experiments is DRI-grass (Drought & Root Herbivore Interactions in a Grassland Ecosystem). This study asks whether Australian grassland ecosystems have stronger responses to the amount or frequency of rain and whether these responses are affected by root herbivores6. Associate Professor Power emphasised that root herbivores are very abundant and their weight can exceed the weight of the sheep in a hectare7. Root herbivores can respond directly and indirectly to changes in rainfall patterns and can make it harder for plants to cope with climate change impacts8.

The research team has set up five different rainfall treatments: +50% rain; -50% rain; 3 week rainfall cycle with the same total amount of rain; summer drought; and the ambient conditions (Figure 3). The rainfall treatments only began in June 2013 and the root herbivores are not yet in place. So far the researchers have observed there are lower species abundances under drought conditions and an increase in summer rain has led to the dominance of African lovegrass.

Figure 3. Rainfall shelters for the DRI-grass experiment in the foothills  of the Blue Mountains (Image: The Hermon Slade Foundation; 6)

Figure 3. Rainfall shelters for the DRI-grass experiment in the foothills
of the Blue Mountains (Image: The Hermon Slade Foundation; 6)

The second project in western Sydney is being conducted in the EucFACE facility (Eucalyptus Free Air CO2 Enrichment)9 located in an intact Cumberland Plain Woodland ecosystem. Associate Professor Power and her team are looking at how elevated CO2 increases rates of nutrient cycling in the ecosystem. So far they have noticed there is an increase in available phosphorus, but no change in the amount of available nitrogen in elevated CO2 conditions.

Once the data is collected from these long term experiments, Associate Professor Power aims to understand some of the impacts of climate change on grassland ecosystems and make recommendations about how these systems should be managed to mitigate these impacts.

 

Learn more:

  1. IPCC (2013). Summary for Policymakers. In: Climate Change 2013: The Physical Science Basis. Working Group I Contribution to the IPCC Fifth Assessment Report. Cambridge University Press, Cambridge.
  2. Fry EL, Manning P, Allen DGP, Hurst A, Everwand G, Rimmler M & Power SA (2013). Plant Functional Group Composition Modifies the Effects of Precipitation Change on Grassland Ecosystem Function. PLoS ONE, 8(2): e57027. doi: 10.1371/journal.pone.0057027.
  3. Fry EL, Power SA & Manning P (2014b). Trait-based classification and manipulation of plant functional groups for biodiversity-ecosystem function experiments. Journal of Vegetation Science, 25, 248–261. doi: 10.1111/jvs.12068.
  4. Fry E, Hurst A, Everwand G, Rimmler M, Manning P & Power S (2009). Poster: “Diversity, Rainfall and Elemental Cycling in a Terrestrial ecosystem, (DIRECT)” presented at Committee for Atmospheric Pollution Effects Research AGM. https://workspace.imperial.ac.uk/climatechange/public/pdfs/CAPER_poster.pdf, accessed 25 May 2014.
  5. Fry EL, Manning P & Power SA (2014a). Ecosystem functions are resistant to extreme changes to rainfall regimes in a mesotrophic grassland. Plant Soil, doi: 10.1007/s11104-014-2137-2.
  6. The Hermon Slade Foundation (2014). Drought, deluge and diversity decline – How do root herbivores affect grassland resilience to predicted changes in rainfall patterns? http://www.hermonslade.org.au/projects/HSF_13_12/hsf_13_12.html, accessed 25 May 2014.
  7. Britton E (1978). A revision of the Australian chafers (Coleoptera: Scarabaeidae: Melolonthinae) Vol. 2. Tribe Melolonthini. Australian Journal of Zoology, 26, 1–150, Supplementary Series.
  8. Bardgett RD & Wardle DA (2003). Herbivore-mediated linkages between aboveground and belowground communities. Ecology, 84, 2258-2268. doi: 10.1890/02-0274.
  9. Hawkesbury Institute of the Environment (2014). EucFACE, http://www.uws.edu.au/hie/facilities/face, accessed 25 May 2014.